Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares
نویسندگان
چکیده
منابع مشابه
Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares
BACKGROUND As presented in the introduction paper, three sets of differentially regulated genes were found after the analysis of the chicken infection data set from EADGENE. Different methods were used to interpret these results. RESULTS GOTM, Pathway Studio and Ingenuity softwares were used to investigate the three lists of genes. The three softwares allowed the analysis of the data and high...
متن کاملBiological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis
BACKGROUND Once a list of differentially expressed genes has been identified from a microarray experiment, a subsequent post-analysis task is required in order to find the main biological processes associated to the experimental system. This paper describes two pathways analysis tools, ArrayUnlock and Ingenuity Pathways Analysis (IPA) to deal with the post-analyses of microarray data, in the co...
متن کاملIngenuity pathway analysis of clozapine-induced obesity.
BACKGROUND Lipid accretion is one of the major side effects of clozapine pharmacotherapy of schizophrenia that made clozapine into an interesting obesity drug model. METHOD Ingenuity Pathway Analysis (IPA) engine was used for core analysis and building the networks of weight regulation. RESULTS The examination of molecules that were selected into 'clozapine neighborhood' identified them as ...
متن کاملComparison of genomic and proteomic data in recurrent airway obstruction affected horses using ingenuity pathway analysis®
BACKGROUND Recurrent airway obstruction (RAO) is a severe chronic respiratory disease affecting horses worldwide, though mostly in the Northern hemisphere. Environmental as well as genetic factors strongly influence the course and prognosis of the disease. Research has been focused on characterization of immunologic factors contributing to inflammatory responses, on genetic linkage analysis, an...
متن کاملCausal analysis approaches in Ingenuity Pathway Analysis
MOTIVATION Prior biological knowledge greatly facilitates the meaningful interpretation of gene-expression data. Causal networks constructed from individual relationships curated from the literature are particularly suited for this task, since they create mechanistic hypotheses that explain the expression changes observed in datasets. RESULTS We present and discuss a suite of algorithms and t...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Proceedings
سال: 2009
ISSN: 1753-6561
DOI: 10.1186/1753-6561-3-s4-s11